ProMS Documentation

ProMS (Protein Marker Selection) is a python package designed to tackle a novel problem of multiview feature selection: given multiple views of same set of samples, select important features from one view of interest (target view) by integrating information from other views. It was initially developed to select protein biomarkers using proteomics data with the help of additional omics views (e.g. RNAseq).

Contents:

• Introduction
  • ProMS: Protein marker selection with proteomics data alone
  • ProMS_mo: Protein marker selection with multi-omics data
• Installation
  • Installing with pip
• Data preparation
  • Training data
  • Test data
• Configuration files
  • Run configuration file
  • Data configuration file
• How to run
• Output files
• Prediction on new data set
• Example